getChimeras {CrispRVariants} | R Documentation

## Get chimeric alignments

### Description

Return chimeric alignments from a collection of aligned sequences

### Usage

    getChimeras(obj, ...)

    ## S4 method for signature 'CrisprSet'
    getChimeras(obj, ..., sample)

### Arguments

`obj` | An object containing aligned sequences
`...` | additional arguments
`sample` | The sample name or sample index to return

### Value

A GAlignment object containing the chimeric read groups

### Author(s)

Helen Lindsay

### Examples

    data("gol_clutch1")
    chimeras <- getChimeras(gol, sample = 2)

[Package CrispRVariants version 1.16.0 Index]