094f00a59c49d4c4a849cc1c11bbb967 *DESCRIPTION
04abe9acd244279b6c0e43be816f967f *INDEX
d4ec96ad1ca0767bf93333d96a54db1b *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
d324206a33902923e176394f8e6298ce *Meta/hsearch.rds
f92229597f1969d5d99dce558cba0bc4 *Meta/links.rds
3375a4a378d83d539f659616a26213e0 *Meta/nsInfo.rds
1a3530457ccf8a8d5e5567b76298d631 *Meta/package.rds
e343dda661a906ded5dd831b97d68911 *Meta/vignette.rds
729c50955a736ca2094cfdcab65e564b *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/CopyNumberPlots
407b6dfdfaa6e08c2ef8592e63f4e823 *R/CopyNumberPlots.rdb
789d6424070d0560c4b39f77cd615a44 *R/CopyNumberPlots.rdx
a319d31378583f387ade3cacf9283e46 *doc/CopyNumberPlots.R
2ea09613c3512a9a27afcbf47cf6f8b6 *doc/CopyNumberPlots.Rmd
fb3b11a192a41b01fb0a816e90ed8526 *doc/CopyNumberPlots.html
7a9b1e5148a20b54afee01ead91772ae *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
66c11b914cca097fab4022bc607133b5 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
ee13d90cbb5c476ef154dc5b5faaa70c *help/AnIndex
323d2bc6347203d377bdce2de80f065b *help/CopyNumberPlots.rdb
958ea6f38469f32aaf1440a8cf6169af *help/CopyNumberPlots.rdx
003b8eafa51970501d5df34c1d3f194f *help/aliases.rds
6bff03df393fa820ad08cafec66c0b4a *help/paths.rds
e22cce105063e553919cfb274e59aade *html/00Index.html
1647d9fcacad3260c7ac21a7ef727ef5 *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
3206950a8b39e75bb9cd928b65d886d0 *html/UCSCStyle.html
9754e9a015d6d3ce4df7ca2eb13b68eb *html/Ztree2Hclust.html
7f78548d31636678efeffc3c9a90e335 *html/colByCopyNumber.html
866f1743ffb10be034c4e8cb2286e972 *html/computeHclustPlotOrder.html
8a014418c287efe8433d8c528089a10c *html/getBAFColumn.html
074aa40f5ef3aea72bba97405acb5844 *html/getChrColumn.html
5c4b264762e515831756ca322e91b74e *html/getColumn.html
c9765d4af0f66eed4458d3f828c00574 *html/getCopyNumberColors.html
70c2a60b1f46347bc87b94a44b4c19f1 *html/getCopyNumberColumn.html
045f23fe4d9694878a37c208ad57a9f8 *html/getEndColumn.html
cbae9f63f9fdae32fac05f97920c9d4a *html/getIDColumn.html
b28020e395506fb726a88adae66d2f0a *html/getLOHColumn.html
41ee9597f9cf7aec518951d2e25761f8 *html/getLRRColumn.html
e4b48f36991e8458bc36cc7540f2f8b9 *html/getPosColumn.html
735c5d63ae06dba7bd7be5e5a6d6b0ab *html/getSegmentValueColumn.html
0df237628f710c64c6c9dce90e9ccdbc *html/getStartColumn.html
61a2452fc269a58d394e896741fbffbc *html/loadCopyNumberCalls.html
3f35e743f57da5be2291b286379326db *html/loadCopyNumberCallsCNVkit.html
fedc27955cb0fdc8329b703319e447ff *html/loadCopyNumberCallsCnmops.html
fc817548474be2ea724dbc6fcab312a5 *html/loadCopyNumberCallsDECoN.html
73243a2568e02790ba79f537efbbdc57 *html/loadCopyNumberCallsDNAcopy.html
09bc6f1e4bf5a56bb80ea50693eaa908 *html/loadCopyNumberCallsPanelcnmops.html
277acc8ff060f44eb7a991faf0e3b636 *html/loadCopyNumberCallsSeg.html
2c466f899d92b1f1b81cc0de1600ffb2 *html/loadCopyNumberCallspennCNV.html
4d4589e3f1577dea9c77eeec69e1c294 *html/loadSNPData.html
b9e75bb2c3677c8635dd1a6e74e8a298 *html/loadSNPDataDNAcopy.html
c52fb04aaa5cce5a7e38f4151756aa14 *html/loadSNPDataFromVCF.html
4877a09764fc1d79b7fd24495231dfa0 *html/plotBAF.html
1cbe246762a90a3ed5f5a683d6141e9a *html/plotCopyNumberCalls.html
7e5d96576467baf8e0825487a9cac66e *html/plotCopyNumberCallsAsLines.html
230e503bcfaf6e0b5dcf2da60fafeb77 *html/plotCopyNumberSummary.html
5da4a7595ca490902866705c61af7d7c *html/plotLRR.html
1460930a9d1127cebd9fb655f2b0fc2b *html/plotSingleCellCopyNumberCalls.html
1159ab3cb6d4272470e2183f8c240649 *html/plotSingleCellCopyNumberSummary.html
2590e9cb23e39bf4dd686d97c9902ac4 *html/prepareLabels.html
47ca9826bdfc661525671ae3ed2e58cc *html/readHDF5Ztree.html
d2910812944f0e013d1866a0913c7772 *html/removeNAs.html
0eae84223daddb7602041e94f003feec *html/transformChr.html
