Package: CiteFuse
Type: Package
Title: CiteFuse: multi-modal analysis of CITE-seq data
Version: 1.0.0
Authors@R: c(
    person("Yingxin", "Lin", email = "yingxin.lin@sydney.edu.au", role = c("aut", "cre")
    ),
    person("Hani", "Kim", email = "jieun.kim@sydney.edu.au", role = c("aut"))
    )
Description: CiteFuse pacakage implements a suite of methods and tools for CITE-seq data from pre-processing to integrative analytics, including doublet detection, network-based modality integration, cell type clustering, differential RNA and protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualisation of the analyses.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0)
Imports: SingleCellExperiment (>= 1.8.0), SummarizedExperiment (>=
        1.16.0), Matrix, mixtools, cowplot, ggplot2, gridExtra, grid,
        dbscan, SNFtool, propr, uwot, Rtsne, S4Vectors (>= 0.24.0),
        igraph, scales, scran (>= 1.14.6), graphics, methods, stats,
        utils, reshape2, ggridges, randomForest, pheatmap, ggraph,
        grDevices, rhdf5, rlang
RoxygenNote: 7.1.0
Suggests: knitr, rmarkdown, DT, mclust, scater, ExPosition, BiocStyle
VignetteBuilder: knitr
LazyData: false
biocViews: SingleCell, GeneExpression
BugReports: https://github.com/SydneyBioX/CiteFuse/issues
git_url: https://git.bioconductor.org/packages/CiteFuse
git_branch: RELEASE_3_11
git_last_commit: 22241fe
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 07:37:35 UTC; biocbuild
Author: Yingxin Lin [aut, cre],
  Hani Kim [aut]
Maintainer: Yingxin Lin <yingxin.lin@sydney.edu.au>
Built: R 4.0.0; ; 2020-04-28 18:21:15 UTC; windows
