readSample {Chicago} | R Documentation

## Read Sample

### Description

This function reads input data from a file, into a `chicagoData` object.

### Usage

    readSample(file, cd)

### Arguments

`file` | The location of an input file FIXME more details!
`cd` | A `chicagoData` object.

### Value

An object of class `chicagoData`.

### Warning

The object `intData(x)` is updated by reference. Thus, `intData(cd)` will be altered. See vignette for further information.

### Author(s)

Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett

### Examples

    filesDir <- file.path(system.file("extdata", package="Chicago"), "unitTestData")
    file <- file.path(filesDir, dir(filesDir))[1]
    print(file) ##we will read in this file

    designDir <- file.path(system.file("extdata", package="Chicago"), "unitTestDesign")

    cd <- setExperiment(designDir=designDir)
    cd <- readAndMerge(file, cd)

[Package Chicago version 1.16.1 Index]