2ab94a6733195eae1c19304bbdab987b *CITATION
2663c34119912513ab9e48edb80962bd *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
9300f3ab63d8318f4ff84c9cc69ed283 *Meta/Rd.rds
a3987bd5344b86597cc0f3bbca0cc7a3 *Meta/data.rds
f51f28e08b4fc215e2f6955f2c2ae531 *Meta/features.rds
f9a424a2980c9767aebeb7fb0c2230d3 *Meta/hsearch.rds
470282418eb77893864f74f4831efb2e *Meta/links.rds
3d35289dd80f27c8697fef2de026e9de *Meta/nsInfo.rds
24b253ff701073990434c7c54132bdde *Meta/package.rds
c1b76bb62d282dfc7e78510188abc503 *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
dcce2bd4a522533d164088fc40e83b95 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Chicago
901d624d06d1822e158245d50e3608d8 *R/Chicago.rdb
ae5bfa382bf486339445b3cd216b0ee2 *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
9eb8fc6ee1d39bc823a5ea6074db1026 *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
96caa2523042278e624099aeafd5b608 *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
4e9a4952e95222a3992d30ea28ce4a8e *help/Chicago.rdb
b45238b4853d0b25b4cf7e7193163719 *help/Chicago.rdx
db79f3e850aaa93f867052db3f409acc *help/aliases.rds
a3aa79b6515b719166fb8668dc3ab301 *help/paths.rds
c24fc552f6fa7e0fcbb6e0deb1b0a1c6 *html/00Index.html
fc3a648061c038d767842499b6925b3e *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
46bbbdbbcfd708eb1c3f21b095162406 *html/cdUnitTest.html
dee3747267f651e19d269938841c0936 *html/chicagoData.html
5e21fbc20e58f09b389b06b98ede732c *html/chicagoPipeline.html
489c094880f4cba70f9e87e46a46bed8 *html/copyCD.html
a298fb493a34741b2209fecdd4f41655 *html/defaultSettings.html
dd2efa514fd361335cc73e02b51fec69 *html/estimateBrownianComponent.html
de0285adcf654e239f865de5f0bd6129 *html/estimateDistFun.html
72b6d24aece03dea8b81d9f6f900613e *html/estimateTechnicalNoise.html
0af89e065a7707e4b9b0c0715eed0934 *html/exportResults.html
67823fa19eb01689ae89c68b0f6d9d9d *html/getPvals.html
0fb820a6498fdfadb265350036cb1e0a *html/getScores.html
9b0dfbe4f5ed8f259e34ea5241834508 *html/getSkOnly.html
96f07fb2e221ec9959469409b4e31da0 *html/mergeSamples.html
7a3dcf4172b294113aa69bdf6564028a *html/modifySettings.html
a817c4972946e9b4fb59fa4fcfef85d5 *html/normaliseBaits.html
659f23e59ef3876e9e327ad3cc34bb47 *html/normaliseOtherEnds.html
e52a1f8cde25d7116e00ce30328c468f *html/overlapFragWithFeatures.html
bdf8491f4b23f0cc6a575a8f09786e87 *html/peakEnrichment4Features.html
568ffd6390eaae72ec94c000e80879b3 *html/plotBaits.html
e10aaa24c83f4f5ea0a8358fd5992d53 *html/plotDistFun.html
26eb052214e39d52dd33ea68a389d9a2 *html/readAndMerge.html
5455bd931e807b4dc675da16c814286b *html/readSample.html
ffa9ab4a01a9f80e2025bcc3e47f4585 *html/setExperiment.html
