# ChIPexoQual

## Documentation for package ‘ChIPexoQual’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ARCvURCplot | ARCvURCplot
beta1 | beta1 methods
beta1-method | beta1 methods
beta2 | beta2 methods
beta2-method | beta2 methods
blacklists | 'list' of 'GRanges' objects with the blacklists generated by the ENCODE and modENCODE projects.
calculateParamDist | calculateParamDist 'calculateParamDist' calculates the quality parameters of one iteration. This function samples 'nregions' rows from the stat matrix and fits the linear model 'lm(d ~ 0 + u + w)'
ExoData | ExoData object and constructors
ExoData-class | ExoData object and constructors
ExoDataBlacklist | ExoDataBlacklist
ExoDataSubsampling | ExoDataSubsampling
exoExample | 'ExoData' results for FoxA1 ChIP-exo experiment
formatRegions | formatRegions 'formatRegions' separates the width, depth and uniquePos summary statistics from the 'ExoData' object to calculate the quality parameters/
FSRDistplot | FSRDistplot
MAplot | MAplot
nreads | nreads methods
nreads-method | nreads methods
paramDist | paramDist methods
paramDist-method | paramDist methods
paramDistBoxplot | paramDistBoxplot
regionCompplot | regionCompplot