ReadLengthFragmentLengthCrossCoverage-methods {ChIPQC} | R Documentation

## Retrieve the cross coverage values when extending reads to the optimal fragment length.

### Description

Retrieve the cross coverage values when extending reads to the optimal fragment length.

### Methods

`signature(object = "ChIPQCexperiment")`

  Retrieve a `vector` of cross-coverage values for all samples in a ChIP-seq experiment, when all reads are shifted by the optimal fragment length (the maximum cross-coverage value).

`signature(object = "list")`

  Retrieve a `vector` of cross-coverage values for all samples in a list of ChIPQCsample objects, when all reads are shifted by the optimal fragment length (the maximum cross-coverage value).

`signature(object = "ChIPQCsample")`

  Retrieve the cross-coverage value for a sample, when all reads are shifted by the optimal fragment length (the maximum cross-coverage value).

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    FragmentLengthCrossCoverage(exampleExp)
    FragmentLengthCrossCoverage(QCsample(exampleExp,1))

[Package ChIPQC version 1.24.1 Index]