isPatternUnique {CRISPRseek} | R Documentation

## Output whether the input patterns occurs only once in the sequence

### Description

Input a sequence and a list of patterns and determine if the patterns occurs only once in the sequence. Used for determining whether a RE site in gRNA also occurs in the flanking region.

### Usage

    isPatternUnique(seq, patterns)

### Arguments

`seq` | flanking sequence of a gRNA
`patterns` | patterns as DNAStringSet, such as a list of RE sites

### Value

returns a character vectors containing the uniqueness of each pattern/RE site

### Author(s)

Lihua Julie Zhu

### Examples

        seq <- "TGGATTGTATAATCAGCATGGATTTGGAAC"
        patterns <- DNAStringSet(c("TGG", "TGGA", "TGGATA", "TTGGAAC", ""))
        isPatternUnique(seq, patterns)
        isPatternUnique(seq)
        isPatternUnique(patterns)

[Package CRISPRseek version 1.28.0 Index]