# Integration of CellNOptR to add missing links

## Documentation for package ‘CNORfeeder’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CNORfeeder-package | R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
Binference | Bayesian network inference
buildFeederObjectDynamic | Building Feeder-Object for the integration to the PKN
cnolist | CNOlist
CNORfeeder | R package to integrate literature-constrained and data-driven methods to infer signalling networks from perturbation experiments
database | OmniPath PPI
feederObject | Feeder Object
gaBinaryT1W | Genetic algorithm used to optimise a model differently weighting links
identifyMisfitIndices | Identifying indices of poorly fitted measurements
indices | Mis-fit indices
integratedModel | Integrated Model
integrateLinks | Integrating the new links to the PKN
linksRanking | Ranking of links inferred from data
makeBTables | Make Boolean tables
mapBTables2model | Integrate Boolean tables with the model
mapDDN2model | Integrate data-drive network with the model
MIinference | Mutual information based network inference
model | Prior Knowledge Network
PPINigraph | Protein-protein interaction netwrok
runDynamicFeeder | Modelling the integrated PKN with CNORode
simData | CNORode simuation data
UniprotIDdream | Uniprot identifiers for proteins in DreamModel
weighting | Weight integrated links.