convertNomenclature {CHRONOS} | R Documentation

## Convert genes identifier nomenclature.

### Description

Convert genes identifier nomenclature.

### Usage

    convertNomenclature(ids, org, from, to)

### Arguments

`ids` | Vector of gene identifiers
`org` | KEGG organism identifier
`from` | Initial identifier type
`to` | A vector of final identifier types

### Details

EntrezGene ID | 'entrezgene'
Ensembl Gene ID | 'ensembl_gene_id'
Ensemble Transcript ID | 'ensembl_transcript_id'
Ensemble Protein ID | 'ensembl_peptide_id'
HGNC ID | 'hgnc_id'
HGNC Symbol | 'hgnc_symbol'
HGNC Transcript name | 'hgnc_transcript_name'
Refseq mRNA ID | 'refseq_mrna'
Refseq Protein ID | 'refseq_peptide'
UniProt/Swissprot Accession | 'uniprot_swissprot_accession'
UniProt/Swissprot ID | 'uniprot_swissprot'
UniGene ID | 'unigene'
UniProt Genename ID | 'uniprot_genename'

### Value

Vector of converted gene identifiers

### Examples

    # Identifiers to be converted
    ids <- c('5091', '5105')

    # Convert to HGNC ID, Ensembl Gene ID and UniProt Genename ID
    from <- 'entrezgene'
    to <- c('hgnc_symbol','ensembl_gene_id', 'uniprot_genename')
    ## Not run: res <- convertNomenclature(ids=ids, org='hsa', from=from, to=to)

[Package CHRONOS version 1.16.0 Index]