CGHnormaliter.write.table {CGHnormaliter} | R Documentation

## Print normalized aCGH data to a file

### Description

This function stores the results of a CGHnormaliter normalization into a plain text file.

### Usage

      CGHnormaliter.write.table(input, data.type=c("normalized","segmented","called"), file=paste(data.type,".txt", sep=""))

### Arguments

`input` | result object of a CGHnormaliter normalization.
`data.type` | type of aCGH data to store.
`file` | file name to store the data in.

### Details

Available aCGH data types are:

- normalized: The normalized log2 intensity ratios

- segmented: The segmented log2 intensity ratios (after normalization)

- called: The calls (after normalization)

The selected data are stored into a tabseparated file with the specified file name.

### Author(s)

Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

### References

Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling, Walter Pirovano and Jaap Heringa. CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations. BMC Genomics, 10:401, 2009.

### See Also

`CGHnormaliter`

### Examples

      data(Leukemia)
      ## Normalize the intensity ratios
      ## Not run: result <- CGHnormaliter(Leukemia)
      ## Write the result to a file
      ## Not run: CGHnormaliter.write.table(result)
      ## Not run: CGHnormaliter.write.table(result, type="segmented")
      ## Not run: CGHnormaliter.write.table(result, type="called", file="mycalls.txt")

[Package CGHnormaliter version 1.42.0 Index]