af06c59e7800ccf7909e4faeca9f84d8 *DESCRIPTION
0014e77731c11256b108bc3707cc3431 *INDEX
a4012d5591488d2828d9541fe79a6ad2 *Meta/Rd.rds
292ac0e00b59a5447c70c89daa13ae43 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
8541fbcf2f52cb024088e8eeded0be10 *Meta/hsearch.rds
77afacf791e00d44175396a6b14b03d6 *Meta/links.rds
72a167e9fb3d45ef8327c08246760f40 *Meta/nsInfo.rds
e71fbb780224d61723b946b3d254dd90 *Meta/package.rds
5945e5bb9950dd88bf20dc8ad90b4067 *Meta/vignette.rds
506ffbc3dfd0c80227151fa007ec2050 *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Biostrings
74d99768b2b38dbb8af3d22b04a6eb1b *R/Biostrings.rdb
c6580e6d7c44ea378d58130d80b0eb81 *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
e919d958d2d4591086ade82640727b72 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
9b08cfdcd94e5fdba462161a2ef58ec3 *doc/Biostrings2Classes.pdf
865d1bbb87a1c74c54539c6482016f15 *doc/BiostringsQuickOverview.Rnw
4637a537ffa7034833ebf97760b0839e *doc/BiostringsQuickOverview.pdf
ebaaf15e9ad9332cc13c3b3a26b47c8a *doc/MultipleAlignments.R
61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
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a57eccb5230ff46ecc58d9694377bb55 *doc/PairwiseAlignments.Rnw
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c464dac6b998f0d563b32be23d69e3e4 *doc/index.html
7d038597048fefbc1cbd6ce356a58696 *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
208abe44866efafca1b53b37b831407d *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
fce14be25eab8521b6ee474b4c36a7df *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
c4114941da5b3499beff7b3f87c84166 *extdata/hg18chr8_gap.txt
76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
34dc76cc8e8e095813131e49f3a03977 *help/AnIndex
9f8f0172425f7488fc7d0f447af4551b *help/Biostrings.rdb
20ef8ebb031b8bc8899f0896f2ad0a8d *help/Biostrings.rdx
aea3f623669f5cc3bff27819310e1b41 *help/aliases.rds
da8511cf0948310eb4f6be5dfaecda96 *help/paths.rds
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937473b5764e1edcf286537e00949082 *html/Biostrings-internals.html
09b84eb14621fbf72a15302549daba2f *html/DNAString-class.html
db5d9ae971b360984a40957454a672f8 *html/GENETIC_CODE.html
3184bf979c686aaa379c6d5ba0c7d760 *html/HNF4alpha.html
4e90009d71bead07c9dbad0877ccb39e *html/IUPAC_CODE_MAP.html
a6eeccf0dbefd8364e1375e262995fa2 *html/InDel-class.html
485e59b79306d1290250a0f398e90439 *html/MIndex-class.html
04b6e0cee63e02531dc25ed5a21bafad *html/MaskedXString-class.html
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adce945707fe062ef71b7b42227a8f21 *html/PDict-class.html
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86041e14a9509cd0033d0c6f6962e2fd *html/XStringPartialMatches-class.html
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53af41719185efd79dd8f86dc074d9b8 *html/XStringSet-class.html
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7846ad16958d28d650c7a6c2925b7b04 *html/XStringSetList-class.html
608c9f1e838906948839e11ced948901 *html/XStringViews-class.html
96a4f202cf37b6f67df023a498243e64 *html/align-utils.html
56638d633ed1f5cb659a7c100f4eb425 *html/chartr.html
dc6da7152665ebc6e74f3c8f1feda032 *html/detail.html
fc34c3c7db19a1e7c8b2907e6e040fb6 *html/dinucleotideFrequencyTest.html
939cfee14c463fbd808f1f2d885317b7 *html/findPalindromes.html
37a7db652100da56d1533d47fd355d46 *html/getSeq.html
92e9b194dd7f91567a593c6f074be4a1 *html/gregexpr2.html
effdbcf7c41cefcecf67a3cf2827e543 *html/injectHardMask.html
390a034a84bdd81b6394b5d17e97b1cf *html/letter.html
13f38e4228900edc3137a3201af3e125 *html/letterFrequency.html
55afacd72bb1ece0fd9951101272c578 *html/longestConsecutive.html
6cdfa698c697af6ccf17cba8182d0569 *html/lowlevel-matching.html
546113f10c3b71545b5d9c80a319d5f8 *html/maskMotif.html
47d732fbf3befa55cb73bb81b10bd7fb *html/match-utils.html
72a6b77920208880889660491f8e369e *html/matchLRPatterns.html
273955b09f8a59efb4f52492cb34a83c *html/matchPDict-exact.html
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ffe8c18c49208bbc32e70b819ead2c9f *html/matchPWM.html
f00f1cf2ab107806e19a3d7cb298435d *html/matchPattern.html
f8b18748a382c9a95b97f8c6e25467a0 *html/matchProbePair.html
ae93e933ce0dcaf647235f5c0feeda5d *html/matchprobes.html
b5564f175176b43f470f8596b0e669ea *html/misc.html
f158a935df4a151a55d39427e6dff2fe *html/needwunsQS.html
d0a1ff76b6965e7b5f72a7318696dc8b *html/nucleotideFrequency.html
71f66a1a04dac1660d20a6feb4170321 *html/padAndClip.html
eb32810c782fb30d0f28240ba27c8cfd *html/pairwiseAlignment.html
c567c5882f7e68f486c8c3313de616ae *html/phiX174Phage.html
3b1b64ad65efcdcb720a7ec97afae5b0 *html/pid.html
f7cc1b7aca849535b980712bf90f5d56 *html/pmatchPattern.html
fc84b6e5bc8015ba21fe91249ff67a0d *html/replaceAt.html
4394855a6ed0839d7b747b68675854c0 *html/replaceLetterAt.html
f26d0af8c63c85a7cac90f523ee638c9 *html/reverseComplement.html
ca10c98952c6febbdd75f2d761b5542e *html/stringDist.html
e2fff1fbfa2486569030f3da343e36a6 *html/substitution_matrices.html
1b326a4b82c53f33dfd33b127346f748 *html/toComplex.html
562aaf80343c5d31efb7d4f171a5a8be *html/translate.html
aa6397f1b734e835af3a5617625d2733 *html/trimLRPatterns.html
6d1061d2f8527d067a9f021addef0d79 *html/xscat.html
1cbb70d1d673bf54bc649ca865fb245c *html/yeastSEQCHR1.html
018adb74d849e8af2c0137070a885e7a *include/Biostrings_defines.h
85307fa7cb5fde749d8691637f311f74 *include/Biostrings_interface.h
f0863ead2abb45524e2a2074c9a8eee7 *include/_Biostrings_stubs.c
ce4d978761fe8db282ac2503b08b0ad7 *libs/i386/Biostrings.dll
fd2da80abf82f41115adcf62e6d1cc72 *libs/x64/Biostrings.dll
16f044e2cdb85f2d44f501610554df57 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
3005f58f4f937842a2813c4cb40f2c6f *unitTests/test_XStringSet.R
46c6cf375691dccb047582d39ca71bef *unitTests/test_XStringSetList.R
c6fed7d62d87e8fd0fd23f978a072ba9 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
81024370010e243c14bd882b4cb9a727 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
