adjustmentBaalPlot {BaalChIP} | R Documentation

## Method adjustmentBaalPlot

### Description

Method adjustmentBaalPlot

Produces a density plot of the distribution of allelic ratios (REF/TOTAL) before and after BaalChIP adjustment for RM and RAF biases.

### Usage

    adjustmentBaalPlot(.Object, col = c("green3", "gray50"))

    ## S4 method for signature 'BaalChIP'
    adjustmentBaalPlot(.Object, col = c("green3", "gray50"))

### Arguments

`.Object` | An object of the `BaalChIP` class.
`col` | A character vector indicating the colours for the density plot ( default is c( 'green3','gray50') ).

### Value

A plot

### Author(s)

Ines de Santiago

### See Also

`BaalChIP.report`, `summaryQC`

### Examples

    data('BaalObject')
    adjustmentBaalPlot(BaalObject)
    adjustmentBaalPlot(BaalObject, col=c('blue','pink'))

[Package BaalChIP version 1.14.0 Index]