boxplot_cluster_expr {BPRMeth} | R Documentation

## Boxplot of clustered expression levels

### Description

Create a boxplot of clustered gene expression levels which depend on the clustered methylation profiles. Each colour denotes a different cluster.

### Usage

    boxplot_cluster_expr(cluster_obj, expr, anno, title = "Expression levels")

### Arguments

`cluster_obj` | The output from `cluster_profiles_vb` or `cluster_profiles_mle` functions.
`expr` | The expression data object.
`anno` | The annotation data object.
`title` | Plot title

### Value

A ggplot2 object.

### Author(s)

C.A.Kapourani C.A.Kapourani@ed.ac.uk

### See Also

`plot_cluster_profiles`, `plot_infer_profiles`, `plot_predicted_expr`

### Examples

    # Cluster methylation profiles using 3 RBFs
    basis <- create_rbf_object(M = 3)
    # Perform clustering
    cl_obj <- cluster_profiles_vb(X = encode_met$met, K = 3, model = "binomial",
               basis = basis, vb_max_iter = 5)
    # Create plot
    g <- boxplot_cluster_expr(cluster_obj = cl_obj, expr = encode_expr,
           anno = encode_met$anno)

[Package BPRMeth version 1.14.1 Index]