pwmscores {ATACseqQC} | R Documentation

## max PWM scores for sequences

### Description

calculate the maximal PWM scores for each given sequences

### Usage

    pwmscores(pwm, subject)

### Arguments

`pwm` | A Position Weight Matrix represented as a numeric matrix with row names A, C, G and T.
`subject` | Typically a DNAString object. A Views object on a DNAString subject, a MaskedDNAString object, or a single character string, are also supported. IUPAC ambiguity letters in `subject` are ignored (i.e. assigned weight 0) with a warning.

### Value

a numeric vector

### Author(s)

Jianhong

[Package ATACseqQC version 1.12.5 Index]