aldex.plotFeature {ALDEx2} | R Documentation

## Show dispersion of the expected values returned by `aldex.effect`

### Description

`aldex.plotFeature` generates density plots showing the dispersion of the expected values given in the output from `aldex.effect`. The expected values are shown in the plots. This is a diagnostic visualization to help determine if the expected values are trustworthy

### Usage

    aldex.plotFeature(
      clrData,
      featureName,
      pooledOnly = FALSE,
      densityOnly = FALSE
    )

### Arguments

`clrData` | the output object from `aldex.clr`
`featureName` | the name of the feature from the input data
`pooledOnly` | show only the pooled plots, default FALSE, shows all plots
`densityOnly` | show only the density plots, default FALSE includes expected values

### Author(s)

Brandon Lieng, Greg Gloor

### References

Please use the citation given by `citation(package="ALDEx2")`.

### See Also

`aldex.clr`, `aldex.effect`, `selex`

### Examples

    data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
    conds <- c(rep("NS", 7), rep("S", 7))
    x <- aldex.clr(selex, conds, mc.samples=4, denom="all")
    aldex.plotFeature(x, "S:D:A:D")

[Package ALDEx2 version 1.20.0 Index]