# Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data

## Documentation for package ‘unifiedWMWqPCR’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

unifiedWMWqPCR-package | Unified Wilcoxon-Mann Whitney Test for qPCR data.
as.matrix-method | S3 method as.matrix for uwmwEstimate objects.
as.matrix-method | S3 method as.matrix for uwmwRes objects.
as.matrix.uwmwEstimate | S3 method as.matrix for uwmwEstimate objects.
as.matrix.uwmwRes | S3 method as.matrix for uwmwRes objects.
coef | Extract info from uwmwRes and uwmwEstimate objects
coef-method | Extract info from uwmwRes and uwmwEstimate objects
esttype | Extract info from uwmwRes and uwmwEstimate objects
esttype-method | Extract info from uwmwRes and uwmwEstimate objects
Extract | Extract data from uwmwRes and uwmwEstimate objects.
forestplot | Making a forest plot of the results of uWMW
forestplot-method | Making a forest plot of the results of uWMW
forestplot.internal | Making a forest plot of the results of uWMW
getEstimate | Extract logor, or, odds and percentages from a uwmwRes object
getEstimate-method | Extract logor, or, odds and percentages from a uwmwRes object
getOrder | Extract info from uwmwRes and uwmwEstimate objects
getOrder-method | Extract info from uwmwRes and uwmwEstimate objects
groupinfo | Extract info from uwmwRes and uwmwEstimate objects
groupinfo-method | Extract info from uwmwRes and uwmwEstimate objects
housekeeping | Extract info from uwmwRes and uwmwEstimate objects
housekeeping-method | Extract info from uwmwRes and uwmwEstimate objects
is.unsorted | Extract info from uwmwRes and uwmwEstimate objects
is.unsorted-method | Extract info from uwmwRes and uwmwEstimate objects
length-method | Extract info from uwmwRes and uwmwEstimate objects
logor | Extract info from uwmwRes and uwmwEstimate objects
logor-method | Extract info from uwmwRes and uwmwEstimate objects
names-method | Extract info from uwmwRes and uwmwEstimate objects
NBdata | Documentation for the dataset NBdata
NBgroups | Documentation for the dataset NBdata
NBmat | Documentation for the dataset NBdata
oddsRatio | Extract info from uwmwRes and uwmwEstimate objects
oddsRatio-method | Extract info from uwmwRes and uwmwEstimate objects
order-method | Sort and order method for uWMWRes objects
orderedBy | Extract info from uwmwRes and uwmwEstimate objects
orderedBy-method | Extract info from uwmwRes and uwmwEstimate objects
plot-method | Quick forest plot of significantly up- and downregulated features.
pval | Extract info from uwmwRes and uwmwEstimate objects
pval-method | Extract info from uwmwRes and uwmwEstimate objects
ref | Extract info from uwmwRes and uwmwEstimate objects
ref-method | Extract info from uwmwRes and uwmwEstimate objects
se | Extract info from uwmwRes and uwmwEstimate objects
se-method | Extract info from uwmwRes and uwmwEstimate objects
sort-method | Sort and order method for uWMWRes objects
sort.uwmwRes | Sort and order method for uWMWRes objects
type | Extract info from uwmwRes and uwmwEstimate objects
type-method | Extract info from uwmwRes and uwmwEstimate objects
unifiedWMWqPCR | Unified Wilcoxon-Mann Whitney Test for qPCR data.
unorder | Sort and order method for uWMWRes objects
unorder-method | Sort and order method for uWMWRes objects
uWMW | The unified Wilcoxon-Mann-Whitney test for qPCR data
uWMW-method | The unified Wilcoxon-Mann-Whitney test for qPCR data
uwmwEstimate | The class uwmwEstimate
uwmwEstimate-class | The class uwmwEstimate
uWMWqPCR | Unified Wilcoxon-Mann Whitney Test for qPCR data.
uwmwRes | Class uwmwRes
uwmwRes-class | Class uwmwRes
uwmw_Accessors | Extract info from uwmwRes and uwmwEstimate objects
uwmw_Extract | Extract data from uwmwRes and uwmwEstimate objects.
vcov | Extract info from uwmwRes and uwmwEstimate objects
vcov-method | Extract info from uwmwRes and uwmwEstimate objects
volcano-par | Parameters used for the function volcanoplot
volcanopar | Parameters used for the function volcanoplot
volcanoplot | Make a volcano plot of the outcome of a uWMW test
volcanoplot-method | Make a volcano plot of the outcome of a uWMW test
volcanoplot-par | Parameters used for the function volcanoplot
volcanoplotpar | Parameters used for the function volcanoplot
zval | Extract info from uwmwRes and uwmwEstimate objects
zval-method | Extract info from uwmwRes and uwmwEstimate objects
[-method | Extract data from uwmwRes and uwmwEstimate objects.