Package: specL
Type: Package
Title: specL - Prepare Peptide Spectrum Matches for Use in Targeted
        Proteomics
Version: 1.2.0
Author: Christian Trachsel <christian.trachsel@fgcz.uzh.ch>, Christian
        Panse <cp@fgcz.ethz.ch>, Jonas Grossmann <jg@fgcz.ethz.ch>
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Depends: R (>= 3.0.2), methods, DBI, RSQLite, seqinr, protViz (>=
        0.2.5),
LinkingTo: Rcpp (>= 0.9.9)
Suggests: RUnit, BiocGenerics, BiocStyle, BiocParallel, plotrix
Description: specL provides a function for generating spectra libraries
        which can be used for MRM SRM MS workflows in proteomics. The
        package provides a BiblioSpec reader, a function which can add
        the protein information using a FASTA formatted amino acid
        file, and an export method for using the created library in the
        Spectronaut software.
License: GPL-3
URL: http://www.bioconductor.org/packages/devel/bioc/html/specL.html
Collate: read.bibliospec.R genSwathIonLib.R annotate.protein_id.R
        AllGenerics.R specL.R specLSet.R
biocViews: MassSpectrometry, Proteomics
LazyData: true
NeedsCompilation: yes
Packaged: 2015-04-17 05:39:29 UTC; biocbuild
Built: R 3.2.0; i386-w64-mingw32; 2015-04-17 13:29:22 UTC; windows
Archs: i386, x64
