Package: rgsepd
Type: Package
Title: Gene Set Enrichment / Projection Displays
Version: 1.0.0
Date: 2015-04-09
Author: Karl Stamm
Maintainer: Karl Stamm <karl.stamm@gmail.com>
Description: R/GSEPD is a bioinformatics package for R to help
        disambiguate transcriptome samples (a matrix of RNA-Seq counts
        at RefSeq IDs) by automating differential expression (with
        DESeq2), then gene set enrichment (with GOSeq), and finally a
        N-dimensional projection to quantify in which ways each sample
        is like either treatment group. 
Depends: R (>= 3.0.0), DESeq2, goseq (>= 1.17)
Imports: gplots, biomaRt, org.Hs.eg.db, GO.db, GenomicRanges, hash,
        AnnotationDbi
Suggests: boot, tools, RUnit, BiocGenerics, knitr, xtable
License: GPL-3
biocViews: Software, DifferentialExpression, GeneSetEnrichment, RNASeq
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-04-17 05:48:32 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 12:32:36 UTC; windows
