Package: regionReport
Type: Package
Title: Generate HTML reports for exploring a set of regions
Version: 1.2.1
Date: 2015-06-09
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcollado@jhu.edu"), person(c("Andrew", "E."), "Jaffe", role = "aut",
    email = "andrew.jaffe@libd.org"), person(c("Jeffrey", "T."), "Leek",
    role = c("aut", "ths"), email = "jtleek@gmail.com"))
Description: Generate HTML reports to explore a set of regions such as the
    results from annotation-agnostic expression analysis of RNA-seq data at
    base-pair resolution performed by derfinder.
License: Artistic-2.0
LazyData: true
URL: https://github.com/lcolladotor/regionReport
BugReports: https://github.com/lcolladotor/regionReport/issues
VignetteBuilder: knitr
biocViews: DifferentialExpression, Sequencing, RNASeq, Software,
        Visualization, Transcription, Coverage
Depends: R(>= 3.2)
Imports: bumphunter (>= 1.7.6), derfinder (>= 1.1.0), derfinderPlot (>=
        1.1.0), devtools (>= 1.6), GenomeInfoDb, GenomicRanges, ggbio
        (>= 1.13.13), ggplot2, grid, gridExtra, IRanges, knitcitations
        (>= 1.0.1), knitr (>= 1.6), knitrBootstrap (>= 0.9.0), mgcv,
        RColorBrewer, rmarkdown (>= 0.3.3), whisker
Suggests: biovizBase, Cairo, TxDb.Hsapiens.UCSC.hg19.knownGene
NeedsCompilation: no
Packaged: 2015-06-10 08:08:23 UTC; biocbuild
Author: Leonardo Collado-Torres [aut, cre],
  Andrew E. Jaffe [aut],
  Jeffrey T. Leek [aut, ths]
Maintainer: Leonardo Collado-Torres <lcollado@jhu.edu>
Built: R 3.2.1; ; 2015-06-10 14:56:49 UTC; windows
