basePlot	basePlot-methods
basePlot,list-method	basePlot-methods
basePlot,SequenceSummary-method	basePlot-methods
basePlot-methods	basePlot-methods
calcKL	calcKL
calcKL,SequenceSummary-method	calcKL
FASTASummary-class	FASTASummary-class
FASTQSummary-class	FASTQSummary-class
gcPlot	gcPlot-methods
gcPlot,list-method	gcPlot-methods
gcPlot,SequenceSummary-method	gcPlot-methods
gcPlot-methods	gcPlot-methods
geom_qlinerange	geom_qlinerange
getBase	getBase-methods
getBase,SequenceSummary-method	getBase-methods
getBase-methods	getBase-methods
getBaseProp	getBaseProp-methods
getBaseProp,SequenceSummary-method	getBaseProp-methods
getBaseProp-methods	getBaseProp-methods
getGC	getGC-methods
getGC,SequenceSummary-method	getGC-methods
getGC-methods	getGC-methods
getKmer	getKmer-methods
getKmer,SequenceSummary-method	getKmer-methods
getKmer-methods	getKmer-methods
getMCQual	getMCQual-methods
getMCQual,FASTQSummary-method	getMCQual-methods
getMCQual-methods	getMCQual-methods
getQual	getQual-methods
getQual,FASTQSummary-method	getQual-methods
getQual-methods	getQual-methods
getSeqlen	getSeqlen-methods
getSeqlen,SequenceSummary-method	getSeqlen-methods
getSeqlen-methods	getSeqlen-methods
kmerEntropyPlot	kmerEntropyPlot
kmerEntropyPlot,list-method	kmerEntropyPlot
kmerEntropyPlot,SequenceSummary-method	kmerEntropyPlot
kmerEntropyPlot-methods	kmerEntropyPlot
kmerKLPlot	kmerKLPlot
kmerKLPlot,list-method	kmerKLPlot
kmerKLPlot,SequenceSummary-method	kmerKLPlot
kmerKLPlot-methods	kmerKLPlot
list2df	list2df
makeReport	makeReport
makeReport,FASTASummary-method	FASTASummary-class
makeReport,FASTQSummary-method	FASTQSummary-class
makeReport-methods	makeReport
plotBases	plotBases
plotBases,SequenceSummary-method	SequenceSummary-class
plotBases-methods	plotBases
plotGC	plotGC
plotGC,SequenceSummary-method	SequenceSummary-class
plotGC-methods	plotGC
plotQuals	plotQuals
plotQuals,FASTQSummary-method	FASTQSummary-class
plotQuals-methods	plotQuals
plotSeqLengths	plotSeqLengths
plotSeqLengths,SequenceSummary-method	SequenceSummary-class
plotSeqLengths-methods	plotSeqLengths
qualPlot	qualPlot-methods
qualPlot,FASTQSummary-method	qualPlot-methods
qualPlot,list-method	qualPlot-methods
qualPlot-methods	qualPlot-methods
readSeqFile	readSeqFile
scale_color_dna	scale_color_dna
scale_color_iupac	scale_color_iupac
seqlenPlot	seqlenPlot-methods
seqlenPlot,list-method	seqlenPlot-methods
seqlenPlot,SequenceSummary-method	seqlenPlot-methods
seqlenPlot-methods	seqlenPlot-methods
SequenceSummary-class	SequenceSummary-class
