# Benchmarking of several gene network inference methods

## Documentation for package ‘netbenchmark’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

netbenchmark-package | Benchmarking of several inference networks methods
aracne.wrap | aracne wrapper function
aupr | Compute metrics
auroc | Compute metrics
c3net.wrap | c3net wrapper function
clr.wrap | CLR wrapper function
comp.metr | Compute metrics
datasource.subsample | Subsampling datasource procedure
evaluate | Inference Evaluation
experiments.bench | Noise sensitivity benchmark
fscore | Compute metrics
GeneNet.wrap | GeneNet wrapper function
Genie3.wrap | Genie3 wrapper function
mean.pr | Compute metrics
mrnet.wrap | mrnet wrapper function
mrnetb.wrap | mrnetb wrapper function
mutrank.wrap | Mutual Rank wrapper function
netbenchmark | Benchmarking of several network inference algorithms from data
netbenchmark_rate | Inference Validation
netbenchmark_zsc | Z-score c++ function
noise.bench | Noise sensitivity test
pcit.wrap | pcit wrapper function
pr.compute | Compute metrics
pr.plot | Compute metrics
rate | Inference Validation
roc.compute | Compute metrics
roc.plot | Compute metrics
zsc | Z-score c++ function
zscore.wrap | Zscore wrapper function