CellDataSet	CellDataSet
CellDataSet-class	CellDataSet
cellPairwiseDistances	cellPairwiseDistances
cellPairwiseDistances<-	cellPairwiseDistances-set
clusterGenes	clusterGenes
compareModels	compareModels
detectGenes	detectGenes
differentialGeneTest	differentialGeneTest
fitModel	fitModel
minSpanningTree	minSpanningTree
minSpanningTree<-	minSpanningTree-set
newCellDataSet	newCellDataSet
orderCells	orderCells
plot_clusters	plot_clusters
plot_genes_in_pseudotime	plot_genes_in_pseudotime
plot_genes_jitter	plot_genes_jitter
plot_genes_positive_cells	plot_genes_positive_cells
plot_spanning_tree	plot_spanning_tree
reducedDimA	reducedDimA
reducedDimA<-	reducedDimA-set
reducedDimS	reducedDimS
reducedDimS<-	reducedDimS-set
reducedDimW	reducedDimW
reducedDimW<-	reducedDimW-set
reduceDimension	reduceDimension
responseMatrix	responseMatrix
selectNegentropyGenes	selectNegentropyGenes
setOrderingFilter	setOrderingFilter
