annotateDMRInfo	annotateDMRInfo
annotateGRanges	annotateGRanges
asBigMatrix	asBigMatrix-methods
asBigMatrix,GenoSet-method	asBigMatrix-methods
asBigMatrix-methods	asBigMatrix-methods
buildAnnotationTracks	buildAnnotationTracks
checkChrName	checkChrName
class:MethyGenoSet	MethyGenoSet-class
coerce,GenoSet,MethyGenoSet-method	MethyGenoSet-class
coerce,MethyGenoSet,MethyLumiM-method	MethyGenoSet-class
coerce,MethyLumiM,MethyGenoSet-method	MethyGenoSet-class
combine,MethyGenoSet,MethyGenoSet-method	MethyGenoSet-class
createTranscriptTrack	createTranscriptTrack
detectDMR.slideWin	detectDMR.slideWin
detection,MethyGenoSet-method	MethyGenoSet-class
detection<-,MethyGenoSet,ANY-method	MethyGenoSet-class
detection<-,MethyGenoSet-method	MethyGenoSet-class
estimateCMR.methylation	estimateCMR.methylation
estimateMethySeq	estimateMethySeq
exampleMethyGenoSet	exampleMethyGenoSet
export.DMRInfo	export.DMRInfo
export.methyGenoSet	export.methyGenoSet
exprs,MethyGenoSet-method	MethyGenoSet-class
exprs<-,MethyGenoSet,ANY-method	MethyGenoSet-class
exprs<-,MethyGenoSet-method	MethyGenoSet-class
filterBisulfiteVariant	filterBisulfiteVariant
getContinuousRegion	getContinuousRegion
getCoverage	getCoverage
getHistory,MethyGenoSet-method	MethyGenoSet-class
heatmapByChromosome	heatmapByChromosome
identifyCpG	identifyCpG
identifySigDMR	identifySigDMR
initialize,MethyGenoSet-method	MethyGenoSet-class
MethyGenoSet	MethyGenoSet-class
MethyGenoSet-class	MethyGenoSet-class
methylated,MethyGenoSet-method	MethyGenoSet-class
methylated<-,MethyGenoSet,ANY-method	MethyGenoSet-class
methylated<-,MethyGenoSet-method	MethyGenoSet-class
MethyLumiM2GenoSet	MethyLumiM2GenoSet
plotHeatmapByGene	plotHeatmapByGene
plotMethylationHeatmapByGene	plotMethylationHeatmapByGene
plotTracksWithDataTrackInfo	plotTracksWithDataTrackInfo
smoothMethyData	smoothMethyData
unmethylated,MethyGenoSet-method	MethyGenoSet-class
unmethylated<-,MethyGenoSet,ANY-method	MethyGenoSet-class
unmethylated<-,MethyGenoSet-method	MethyGenoSet-class
[,MethyGenoSet,ANY,ANY,ANY-method	MethyGenoSet-class
[,MethyGenoSet-method	MethyGenoSet-class
