# Testing groups of covariates/features for association with a response variable, with applications to gene set testing

## Documentation for package ‘globaltest’ version 5.22.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

alias-method | Class "gt.object" for storing the result of the function gt
alias<- | Class "gt.object" for storing the result of the function gt
alias<--method | Class "gt.object" for storing the result of the function gt
bbase | Goodness of fit testing in regression models using Global Test
btensor | Goodness of fit testing in regression models using Global Test
coefficients-method | Multinomial Logistic Regression
comparative | Comparative proportions for the Global Test
covariates | Global Test diagnostic plots
diagnostics | Global Test diagnostic plots
draw | Multiple testing correction for the Global Test
extract | Class "gt.object" for storing the result of the function gt
extract-method | Class "gt.object" for storing the result of the function gt
features | Global Test diagnostic plots
findFocus | Multiple testing correction for the Global Test
fitted.values-method | Multinomial Logistic Regression
focusLevel | Multiple testing correction for the Global Test
globaltest | Global Test
gt | Global Test
gt.object | Class "gt.object" for storing the result of the function gt
gt.object-class | Class "gt.object" for storing the result of the function gt
gt.options | Options for globaltest package
gtBroad | Gene set testing of gene set databases using Global Test
gtConcept | Gene set testing of gene set databases using Global Test
gtGO | Gene set testing of gene set databases using Global Test
gtKEGG | Gene set testing of gene set databases using Global Test
gtKS | Goodness of fit testing in regression models using Global Test
gtLI | Goodness of fit testing in regression models using Global Test
gtPS | Goodness of fit testing in regression models using Global Test
hist-method | Class "gt.object" for storing the result of the function gt
inheritance | Multiple testing correction for the Global Test
leafNodes | Multiple testing correction for the Global Test
length-method | Class "gt.object" for storing the result of the function gt
mlogit | Multinomial Logistic Regression
mlogit-class | Multinomial Logistic Regression
model.matrix-method | Class "gt.object" for storing the result of the function gt
names-method | Class "gt.object" for storing the result of the function gt
names<--method | Class "gt.object" for storing the result of the function gt
p.adjust-method | Class "gt.object" for storing the result of the function gt
p.value | Class "gt.object" for storing the result of the function gt
p.value-method | Class "gt.object" for storing the result of the function gt
reparamZ | Goodness of fit testing in regression models using Global Test
residuals-method | Multinomial Logistic Regression
result | Class "gt.object" for storing the result of the function gt
result-method | Class "gt.object" for storing the result of the function gt
reweighZ | Goodness of fit testing in regression models using Global Test
show-method | Class "gt.object" for storing the result of the function gt
show-method | Multinomial Logistic Regression
size | Class "gt.object" for storing the result of the function gt
size-method | Class "gt.object" for storing the result of the function gt
sort-method | Class "gt.object" for storing the result of the function gt
sterms | Goodness of fit testing in regression models using Global Test
sterms-method | Class "gt.object" for storing the result of the function gt
subjects | Global Test diagnostic plots
subsets | Class "gt.object" for storing the result of the function gt
subsets-method | Class "gt.object" for storing the result of the function gt
summary-method | Class "gt.object" for storing the result of the function gt
summary-method | Multinomial Logistic Regression
weights-method | Class "gt.object" for storing the result of the function gt
z.score | Class "gt.object" for storing the result of the function gt
z.score-method | Class "gt.object" for storing the result of the function gt
[-method | Class "gt.object" for storing the result of the function gt
[[-method | Class "gt.object" for storing the result of the function gt