genoset-package	genoset-package
.do_rledf_range_summary	do_rledf_range_summary
.do_rledf_views	do_rledf_views
as.matrix,RleDataFrame-method	RleDataFrame-class
baf2mbaf	baf2mbaf
boundingIndices	boundingIndices
boundingIndicesByChr	boundingIndicesByChr
bounds2Rle	bounds2Rle
calcGC	calcGC
chr	chr-methods
chr,GenomicRanges-method	chr-methods
chr,GenoSet-method	chr-methods
chrIndices	chrIndices-methods
chrIndices,GenoSetOrGenomicRanges-method	chrIndices-methods
chrInfo	chrInfo-methods
chrInfo,GenoSetOrGenomicRanges-method	chrInfo-methods
chrNames	chrNames-methods
chrNames,GenomicRanges-method	chrNames-methods
chrNames,GenoSet-method	chrNames-methods
chrNames<-	chrNames-methods
chrNames<-,GenomicRanges-method	chrNames-methods
chrNames<-,GenoSet-method	chrNames-methods
chrOrder	chrOrder
cn2lr	cn2lr-methods
cn2lr,DataFrame-method	cn2lr-methods
cn2lr,matrix-method	cn2lr-methods
cn2lr,numeric-method	cn2lr-methods
coerce,RleDataFrame,matrix-method	RleDataFrame-class
colMeans,DataFrame-method	RleDataFrame-class
colMeans,RleDataFrame-method	RleDataFrame-class
colnames,GenoSet-method	colnames
colnames<-,GenoSet-method	colnames
colSums,RleDataFrame-method	RleDataFrame-class
dim,GenoSet-method	dim-GenoSet-method
elementLengths,GenomicRanges-method	elementLengths-methods
elementLengths,GenoSet-method	elementLengths-methods
end,GenoSet-method	end-GenoSet-method
fake.baf	genoset-dataset
fake.cn	genoset-dataset
fake.lrr	genoset-dataset
fake.pData	genoset-dataset
featureNames,GenomicRanges-method	rownames-methods
featureNames,GenoSet-method	rownames-methods
featureNames<-,GenomicRanges-method	rownames-methods
featureNames<-,GenoSet-method	rownames-methods
fixSegNAs	fixSegNAs
gcCorrect	gcCorrect
genome	genome
genome,GenoSet-method	genome-methods
genome<-,GenoSet-method	genome-methods
genomeAxis	genomeAxis
genoPlot	genoPlot-methods
genoPlot,GenoSetOrGenomicRanges,ANY-method	genoPlot-methods
genoPlot,numeric,numeric-method	genoPlot-methods
genoPlot,numeric,Rle-method	genoPlot-methods
genoPos	genoPos-methods
genoPos,GenoSetOrGenomicRanges-method	genoPos-methods
GenoSet	GenoSet
genoset	genoset-package
GenoSet-class	GenoSet-class
genoset-datasets	genoset-dataset
genoset-defunct	genoset-defunct
genoset-deprecated	genoset-deprecated
genoset.ds	genoset-dataset
GenoSetOrGenomicRanges-class	GenoSet-class
initGenoSet	initGenoSet
isGenomeOrder	isGenomeOrder-methods
isGenomeOrder,GenoSet-method	isGenomeOrder-methods
isGenomeOrder,GRanges-method	isGenomeOrder-methods
locData	locData-methods
locData,GenoSet-method	locData-methods
locData.gr	genoset-dataset
locData<-	locData-methods
locData<-,GenoSet,GenomicRanges-method	locData-methods
lr2cn	lr2cn
modeCenter	modeCenter
names,GenoSet-method	names-GenoSet-method
nrow,GenomicRanges-method	nrow-GenomicRanges-method
nrow,GRanges-method	nrow-GRanges-method
numCallable	numCallable
pos	pos-methods
pos,GenoSetOrGenomicRanges-method	pos-methods
rangeColMeans	RleDataFrame-views
rangeMaxs	RleDataFrame-views
rangeMaxs,RleDataFrame-method	RleDataFrame-views
rangeMeans	RleDataFrame-views
rangeMeans,matrix-method	RleDataFrame-views
rangeMeans,numeric-method	RleDataFrame-views
rangeMeans,RleDataFrame-method	RleDataFrame-views
rangeMins	RleDataFrame-views
rangeMins,RleDataFrame-method	RleDataFrame-views
rangeSampleMeans	rangeSampleMeans
rangeSegMeanLength	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,data.frame-method	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,list-method	rangeSegMeanLength-methods
rangeSums	RleDataFrame-views
rangeSums,RleDataFrame-method	RleDataFrame-views
rangeWhichMaxs	RleDataFrame-views
rangeWhichMaxs,RleDataFrame-method	RleDataFrame-views
rangeWhichMins	RleDataFrame-views
rangeWhichMins,RleDataFrame-method	RleDataFrame-views
readGenoSet	readGenoSet
RleDataFrame	RleDataFrame-class
RleDataFrame-class	RleDataFrame-class
RleDataFrame-views	RleDataFrame-views
rowMeans,RleDataFrame-method	RleDataFrame-class
rownames,GenomicRanges-method	rownames-methods
rownames,GenoSet-method	rownames-methods
rownames<-,GenomicRanges-method	rownames-methods
rownames<-,GenoSet-method	rownames-methods
rowSums,RleDataFrame-method	RleDataFrame-class
runCBS	runCBS
sampleNames,GenoSet-method	colnames
sampleNames<-,GenoSet,ANY-method	colnames
segPairTable	segPairTable-methods
segPairTable,DataFrame,DataFrame-method	segPairTable-methods
segPairTable,Rle,Rle-method	segPairTable-methods
segs2Granges	segs2Granges
segs2Rle	segs2Rle
segs2RleDataFrame	segs2RleDataFrame
segTable	segTable-methods
segTable,DataFrame-method	segTable-methods
segTable,Rle-method	segTable-methods
show,GenoSet-method	show-GenoSet-method
show,RleDataFrame-method	RleDataFrame-class
start,GenoSet-method	start-GenoSet-method
subsetAssayData	subsetAssayData
toGenomeOrder	toGenomeOrder-methods
toGenomeOrder,GenoSet-method	toGenomeOrder-methods
toGenomeOrder,GRanges-method	toGenomeOrder-methods
width,GenoSet-method	width-GenoSet-method
[,GenoSet,ANY-method	genoset-subset
[,GenoSet,character-method	genoset-subset
[,GenoSet,GenomicRanges-method	genoset-subset
[<-,GenoSet,ANY,ANY,ANY-method	genoset-subset
