Package: genoset
Type: Package
Title: Provides classes similar to ExpressionSet for copy number
        analysis
Version: 1.22.0
Date: 2011-01-15
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty@gene.com>
Description: Load, manipulate, and plot copynumber and BAF data.
    GenoSet class extends eSet by adding a "locData" slot for a
    GRanges object. This object contains feature
    genome location data and provides for efficient subsetting on
    genome location.
    Provides convenience functions for processing of copy number and
    B-Allele Frequency data. Provides the class RleDataFrame to
    store runs of data along the genome for multiple samples.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.10), BiocGenerics (>= 0.11.3), Biobase (>= 2.15.1),
        GenomicRanges (>= 1.17.19)
Imports: S4Vectors (>= 0.2.3), GenomeInfoDb (>= 1.1.3), IRanges,
        methods, graphics
Suggests: RUnit, DNAcopy, stats, BSgenome, Biostrings
Enhances: parallel
ByteCompile: TRUE
biocViews: Infrastructure, DataRepresentation, Microarray, SNP,
        CopyNumberVariation
Roxygen: list(wrap=TRUE)
Collate: 'genoset-class.R' 'RleDataFrame-class.R'
        'RleDataFrame-methods.R' 'bounds.R' 'junk.R' 'ordering.R'
        'plots.R' 'rangeSummaries.R' 'segments.R'
        'test_genoset_package.R' 'utils.R'
URL: https://github.com/phaverty/genoset
Packaged: 2015-04-17 03:40:15 UTC; biocbuild
NeedsCompilation: yes
Built: R 3.2.0; i386-w64-mingw32; 2015-04-17 09:13:53 UTC; windows
Archs: i386, x64
