Package: flowWorkspace
Type: Package
Title: Import flowJo Workspaces into BioConductor and replicate flowJo
        gating with flowCore
Version: 3.14.9
Date: 2011-06-10
Author: Greg Finak, Mike Jiang
Maintainer: Greg Finak <gfinak@fhcrc.org>,Mike Jiang <wjiang2@fhcrc.org>
Description: This package is designed to facilitate comparison of automated
    gating methods against manual gating done in flowJo. This package allows
    you to import basic flowJo workspaces into BioConductor and replicate the
    gating from flowJo using the flowCore functionality. Gating hierarchies,
    groups of samples, compensation, and transformation are performed so that
    the output matches the flowJo analysis.
License: Artistic-2.0
LazyLoad: yes
Imports: Biobase, BiocGenerics, graph, graphics, lattice, methods,
        stats, stats4, utils, RBGL, XML, tools,gridExtra,Rgraphviz
        ,data.table ,plyr ,latticeExtra ,Rcpp ,RColorBrewer ,stringr
Collate: 'AllGenerics.R' 'AllClasses.R' 'flowJoWorkspace-Methods.R'
        'GatingHierarchy-Methods.R' 'GatingSet-Methods.R'
        'GatingSetList-Methods.R' 'filterObject-Methods.R'
        'add-Methods.R' 'setGate-Methods.R' 'RcppExports.R'
        'merge-GatingSet.R' 'zzz.R'
Depends: R (>= 2.16.0),flowCore(>= 1.33.13),flowViz(>=
        1.29.27),ncdfFlow(>= 2.13.04),gridExtra
biocViews: FlowCytometry, DataImport, Preprocessing, DataRepresentation
Suggests: testthat ,flowWorkspaceData ,RSVGTipsDevice ,knitr
LinkingTo: Rcpp, BH(>= 1.58.0-1)
VignetteBuilder: knitr
SystemRequirements: xml2, GNU make
NeedsCompilation: yes
Packaged: 2015-10-09 03:46:21 UTC; biocbuild
Built: R 3.2.2; i386-w64-mingw32; 2015-10-09 08:50:24 UTC; windows
Archs: i386, x64
