Package: flipflop
Title: Fast lasso-based isoform prediction as a flow problem
Version: 1.6.1
Date: 2013-09-26
Author: Elsa Bernard, Laurent Jacob, Julien Mairal and Jean-Philippe
        Vert
Maintainer: Elsa Bernard <elsa.bernard@mines-paristech.fr>
Description: Flipflop discovers which isoforms of a gene are expressed
        in a given sample together with their abundances, based on
        RNA-Seq read data. It takes an alignment file in SAM format as input.
	It can also discover transcripts from several samples simultaneously, 
	increasing statistical power.
License: GPL-3
LazyLoad: yes
Imports: methods, Matrix, IRanges, GenomicRanges, parallel
Suggests: GenomicFeatures
SystemRequirements: GNU make
Depends: R (>= 2.10.0)
NeedsCompilation: yes
BuildVignettes: true
URL: http://cbio.ensmp.fr/flipflop
biocViews: RNASeq, RNASeqData, AlternativeSplicing, Regression
Packaged: 2015-07-03 04:41:45 UTC; biocbuild
Built: R 3.2.1; i386-w64-mingw32; 2015-07-03 08:37:00 UTC; windows
Archs: i386, x64
