.plotcA	plot
.plotpA	plot
.plotpD	plot
addAMDISPeaks	addAMDISPeaks
addChromaTOFPeaks	addChromaTOFPeaks
addXCMSPeaks	addXCMSPeaks
align,correlatioAligment	correlationAlignment-class
betweenAlignment	betweenAlignment
betweenAlignment-class	betweenAlignment
betweenAlignment-show	betweenAlignment
calcTimeDiffs	calcTimeDiffs
clusterAlignment	clusterAlignment
clusterAlignment-class	clusterAlignment
clusterAlignment-plot	clusterAlignment
clusterAlignment-show	clusterAlignment
compress	compress
compress,clusterAlignment-method	compress
compress,peaksAlignment-method	compress
compress,progressiveAlignment-method	compress
correlationAlignment	correlationAlignment
correlationAlignment-class	correlationAlignment-class
correlationAlignment-show	correlationAlignment-class
decompress	compress
decompress,clusterAlignment-method	compress
decompress,peaksAlignment-method	compress
decompress,progressiveAlignment-method	compress
dp	dp
eitherMatrix-class	eitherMatrix
gatherInfo	gatherInfo
imputePeaks	imputePeaks
multipleAlignment	multipleAlignment
multipleAlignment-class	multipleAlignment
multipleAlignment-show	multipleAlignment
normDotProduct	normDotProduct
parseChromaTOF	parseChromaTOF
parseELU	parseELU
peaksAlignment	peaksAlignment
peaksAlignment-class	peaksAlignment
peaksAlignment-plot	peaksAlignment
peaksAlignment-show	peaksAlignment
peaksDataset	peaksDataset
peaksDataset-class	peaksDataset
peaksDataset-plot	peaksDataset
peaksDataset-show	peaksDataset
plot	plot
plot,clusterAlignment,ANY-method	clusterAlignment
plot,clusterAlignment-method	clusterAlignment
plot,peaksAlignment,ANY-method	peaksAlignment
plot,peaksAlignment-method	peaksAlignment
plot,peaksDataset,ANY-method	peaksDataset
plot,peaksDataset-method	peaksDataset
plotImage	plotImage
plotImage,peaksDataset-method	plotImage
progressiveAlignment	progressiveAlignment
progressiveAlignment-class	progressiveAlignment
progressiveAlignment-show	progressiveAlignment
rmaFitUnit	rmaFitUnit
show,betweenAlignment-method	betweenAlignment
show,clusterAlignment-method	clusterAlignment
show,correlationAlignment-method	correlationAlignment-class
show,correlationAlignment-method, ANY-methods	correlationAlignment-class
show,multipleAlignment-method	multipleAlignment
show,peaksAlignment-method	peaksAlignment
show,peaksDataset-method	peaksDataset
show,progressiveAlignment-method	progressiveAlignment
