# Utilities to create and use an Ensembl based annotation database

## Documentation for package ‘ensembldb’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BasicFilter-class | Filter results fetched from the Ensembl database
buildQuery | Basic usage of an Ensembl based annotation database
buildQuery-method | Basic usage of an Ensembl based annotation database
column | Filter results fetched from the Ensembl database
column-method | Filter results fetched from the Ensembl database
condition | Filter results fetched from the Ensembl database
condition-method | Filter results fetched from the Ensembl database
dbconn | Basic usage of an Ensembl based annotation database
dbconn-method | Basic usage of an Ensembl based annotation database
disjointExons-method | Retrieve annotation data from an Ensembl based package
EnsDb | Basic usage of an Ensembl based annotation database
EnsDb-class | Basic usage of an Ensembl based annotation database
ensDbFromGRanges | Generating a Ensembl annotation package from Ensembl
ensDbFromGtf | Generating a Ensembl annotation package from Ensembl
EntrezidFilter | Constructor functions for filter objects
EntrezidFilter-class | Filter results fetched from the Ensembl database
ExonidFilter | Constructor functions for filter objects
ExonidFilter-class | Filter results fetched from the Ensembl database
exons | Retrieve annotation data from an Ensembl based package
exons-method | Retrieve annotation data from an Ensembl based package
exonsBy | Retrieve annotation data from an Ensembl based package
exonsBy-method | Retrieve annotation data from an Ensembl based package
fetchTablesFromEnsembl | Generating a Ensembl annotation package from Ensembl
GenebiotypeFilter | Constructor functions for filter objects
GenebiotypeFilter-class | Filter results fetched from the Ensembl database
GeneidFilter | Constructor functions for filter objects
GeneidFilter-class | Filter results fetched from the Ensembl database
GenenameFilter | Constructor functions for filter objects
GenenameFilter-class | Filter results fetched from the Ensembl database
genes | Retrieve annotation data from an Ensembl based package
genes-method | Retrieve annotation data from an Ensembl based package
lengthOf | Basic usage of an Ensembl based annotation database
lengthOf-method | Basic usage of an Ensembl based annotation database
listColumns | Basic usage of an Ensembl based annotation database
listColumns-method | Basic usage of an Ensembl based annotation database
listGenebiotypes | Basic usage of an Ensembl based annotation database
listGenebiotypes-method | Basic usage of an Ensembl based annotation database
listTables | Basic usage of an Ensembl based annotation database
listTables-method | Basic usage of an Ensembl based annotation database
listTxbiotypes | Basic usage of an Ensembl based annotation database
listTxbiotypes-method | Basic usage of an Ensembl based annotation database
makeEnsembldbPackage | Generating a Ensembl annotation package from Ensembl
makeEnsemblSQLiteFromTables | Generating a Ensembl annotation package from Ensembl
metadata | Basic usage of an Ensembl based annotation database
metadata-method | Basic usage of an Ensembl based annotation database
organism | Basic usage of an Ensembl based annotation database
organism-method | Basic usage of an Ensembl based annotation database
print-method | Filter results fetched from the Ensembl database
SeqendFilter | Constructor functions for filter objects
SeqendFilter-class | Filter results fetched from the Ensembl database
seqinfo | Basic usage of an Ensembl based annotation database
seqinfo-method | Basic usage of an Ensembl based annotation database
SeqnameFilter | Constructor functions for filter objects
SeqnameFilter-class | Filter results fetched from the Ensembl database
SeqstartFilter | Constructor functions for filter objects
SeqstartFilter-class | Filter results fetched from the Ensembl database
SeqstrandFilter | Constructor functions for filter objects
SeqstrandFilter-class | Filter results fetched from the Ensembl database
show | Basic usage of an Ensembl based annotation database
show-method | Basic usage of an Ensembl based annotation database
show-method | Filter results fetched from the Ensembl database
toSAF | Retrieve annotation data from an Ensembl based package
toSAF-method | Retrieve annotation data from an Ensembl based package
transcripts | Retrieve annotation data from an Ensembl based package
transcripts-method | Retrieve annotation data from an Ensembl based package
transcriptsBy | Retrieve annotation data from an Ensembl based package
transcriptsBy-method | Retrieve annotation data from an Ensembl based package
TxbiotypeFilter | Constructor functions for filter objects
TxbiotypeFilter-class | Filter results fetched from the Ensembl database
TxidFilter | Constructor functions for filter objects
TxidFilter-class | Filter results fetched from the Ensembl database
where | Filter results fetched from the Ensembl database
where-method | Filter results fetched from the Ensembl database