Package: diffHic
Version: 1.0.1
Date: 2015/08/18
Title: Differential analyis of Hi-C data
Author: Aaron Lun <alun@wehi.edu.au>
Maintainer: Aaron Lun <alun@wehi.edu.au>
Depends: R (>= 3.2.0), GenomicRanges
Imports: Rsamtools, Biostrings, BSgenome, rhdf5, edgeR, limma, csaw,
        locfit, methods, IRanges, S4Vectors, GenomeInfoDb, BiocGenerics
Suggests: BSgenome.Ecoli.NCBI.20080805
biocViews: MultipleComparison, Preprocessing, Sequencing, Coverage,
        Alignment, Normalization, Clustering, HiC
Description: Detects differential interactions across biological
        conditions in a Hi-C experiment. Methods are provided for read
        alignment and data pre-processing into interaction counts.
        Statistical analysis is based on edgeR and supports
        normalization and filtering. Several visualization options are
        also available.
License: GPL-3
NeedsCompilation: yes
Packaged: 2015-08-19 06:05:00 UTC; biocbuild
Built: R 3.2.2; i386-w64-mingw32; 2015-08-19 08:26:01 UTC; windows
Archs: i386, x64
