Package: customProDB
Type: Package
Title: Generate customized protein database from NGS data, with a focus
        on RNA-Seq data, for proteomics search.
Version: 1.8.2
Date: 2015-05-29
Author: xiaojing wang
Maintainer: xiaojing wang <xiaojing.wang@vanderbilt.edu>
Description: Generate customized protein sequence database from RNA-Seq
        data for proteomics search
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports: IRanges, GenomicRanges, Rsamtools (>= 1.10.2),
        GenomicAlignments, Biostrings (>= 2.26.3), GenomicFeatures (>=
        1.17.13), biomaRt (>= 2.17.1), stringr, RCurl, plyr,
        VariantAnnotation (>= 1.13.44), rtracklayer, RSQLite,
        AnnotationDbi
Suggests: BSgenome.Hsapiens.UCSC.hg19
LazyLoad: yes
biocViews: MassSpectrometry, Proteomics, SNP, RNASeq, Software,
        Transcription, AlternativeSplicing
NeedsCompilation: no
Packaged: 2015-05-30 04:19:55 UTC; biocbuild
Built: R 3.2.0; ; 2015-05-30 07:44:14 UTC; windows
