Package: compcodeR
Type: Package
Title: RNAseq data simulation, differential expression analysis and
        performance comparison of differential expression methods
Version: 1.4.0
Author: Charlotte Soneson
Maintainer: Charlotte Soneson <Charlotte.Soneson@isb-sib.ch>
Description: This package provides extensive functionality for
    comparing results obtained by different methods for
    differential expression analysis of RNAseq data. It also
    contains functions for simulating count data and interfaces to
    several packages for performing the differential expression
    analysis.
Depends: R (>= 3.0.2), sm
Imports: tcltk, knitr (>= 1.2), markdown, ROCR, lattice (>= 0.16),
        gplots, gtools, gdata, caTools, grid, KernSmooth, MASS,
        ggplot2, stringr, modeest, edgeR, limma, vioplot, methods
Suggests: BiocStyle, EBSeq, DESeq, DESeq2 (>= 1.1.31), baySeq (>=
        1.16.0), genefilter, NOISeq, TCC, samr, NBPSeq
Enhances: rpanel, DSS
License: GPL (>= 2)
VignetteBuilder: knitr
biocViews: RNASeq, DifferentialExpression
NeedsCompilation: no
Packaged: 2015-04-17 05:11:22 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 07:41:39 UTC; windows
