Package: coMET
Type: Package
Title: coMET: visualisation of regional epigenome-wide association scan
        (EWAS) results and DNA co-methylation patterns.
Version: 1.0.0
Date: 2015-04-10
Author: Tiphaine C. Martin, Idil Yet, Pei-Chien Tsai, Jordana T. Bell
Maintainer: Tiphaine Martin <tiphaine.martin@kcl.ac.uk>
Description: Visualisation of EWAS results in a genomic region. In addition to phenotype-association P-values, coMET also generates plots of co-methylation patterns and provides a series of annotation tracks. It can be used to other omic-wide association scans as long as the data can be translated to genomic level and for any species.
Depends: R (>= 3.1.0), grid, biomaRt, Gviz (>= 1.10.9), psych
Suggests: knitr, RUnit, BiocGenerics, BiocStyle
Imports: colortools, hash, grDevices, gridExtra, rtracklayer, IRanges,
        S4Vectors, GenomicRanges, ggbio, ggplot2, trackViewer
License: GPL (>= 2)
URL: http://epigen.kcl.ac.uk/comet
biocViews: Software, DifferentialMethylation, Visualization,
        Sequencing, Genetics, FunctionalGenomics, Microarray,
        MethylationArray, MethylSeq, ChIPSeq, DNASeq, RIPSeq, RNASeq,
        ExomeSeq, DNAMethylation, GenomeWideAssociation
VignetteBuilder: knitr
NeedsCompilation: no
Repository: Bioconductor
Packaged: 2015-04-17 05:48:01 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 07:41:33 UTC; windows
