Package: chroGPS
Type: Package
Title: chroGPS: visualizing the epigenome
Version: 1.12.0
Date: 2015-04-09
Author: Oscar Reina, David Rossell
Maintainer: Oscar Reina <oscar.reina@irbbarcelona.org>
Description: We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.
License: GPL (>=2.14)
Depends: R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics,
        stats, changepoint
#Imports: graphics, cluster, DPpackage, ICSNP
Imports: cluster, DPpackage, ICSNP
Enhances: parallel, XML, rgl
Collate: adjustPeaks.R distGPS.R domainDist.R mds-class.R mds.R
        procrustesAdj.R clusGPS.R geneSetGPS.R getmodEncode.R
        gff2RDList.R gps2xgmml.R
LazyLoad: yes
biocViews: Visualization, Clustering
NeedsCompilation: no
Packaged: 2015-04-17 04:18:29 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 07:22:15 UTC; windows
