# Bayesian Inference of Regulation of Transcriptional Activity

## Documentation for package ‘birta’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

birta-package | Joint Bayesian Inference of miRNA and Transcription Factor Activities
birta | Main interface for Bayesian Inference of Regulation of Transcriptional Activity.
birta-method | Methods for Function 'birta' in Package 'birta'
birta-methods | Methods for Function 'birta' in Package 'birta'
EColiNetwork | Example TF-target graph from Regulon DB.
EColiOxygen | Example data set from E. Coli to sample TF activities.
genesets | TF-target and miRNA-target networks for simulated example.
get_potential_swaps | Calculate swap partner for TF-/miRNA-target graph.
limmaAnalysis | Perform a limma analysis on expression data.
limmaAnalysis-method | Methods for Function 'limmaAnalysis' in Package 'birta'
limmaAnalysis-methods | Methods for Function 'limmaAnalysis' in Package 'birta'
plotConvergence | Plotting the likelihood along MCMC sampling.
potential_swaps | Potential swap moves for TF-target and miRNA-target networks (see genestes data set).
sim | Simulated expression data for mRNAs and miRNAs.
TFexpr | Transcription factor expression values for the aerobic-anaerobic growth experiment.