# Estimate protein complex membership using AP-MS protein data

## Documentation for package ‘apComplex’ version 2.34.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adjBinFUN | Computes change in LxC measure
apEX | Example data set for apComplex package
apEXG | Example data set for apComplex package
bhmaxSubgraph | Find maximal BH-complete subgraph
findComplexes | Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology
fisherFUN | Computes change in LxC measure
gavin06FilteredEstimates | AP-MS data complex estimates
gavinBP2006 | Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
gavinBP2006graph | Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
HMSPCI | High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
HMSPCIgraph | High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
Krogan | High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004)
krogan06FilteredEstimates | AP-MS data complex estimates
kroganBPMat2006 | Tandem Affinity Purification (TAP) Data from Krogan et al. (2006)
LCjoin | Computes change in LxC measure
LCjoinadjBin | Computes change in LxC measure
LCjoinfisher | Computes change in LxC measure
LCjoinLchange | Computes change in LxC measure
MBMEcHMSPCI | HMSPCI data complex estimates
MBMEcKrogan | Krogan data complex estimates
MBMEcTAP | TAP data complex estimates
mergeComplexes | Iteratively combine columns in initial PCMG estimate
plotComplex | Render complex estimates
SBMHcHMSPCI | HMSPCI data complex estimates
SBMHcTAP | TAP data complex estimates
sortComplexes | Sort complex estimates
TAP | Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
TAPgraph | Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
UnRBBcHMSPCI | HMSPCI data complex estimates
UnRBBcTAP | TAP data complex estimates
yNameTAP | TAP data complex estimates using standard gene names
yTAP | yTAP Complexes published Gavin, et al. (2002).