# Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

## Documentation for package ‘affyPara’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bgCorrectPara | Parallelized Background Correction
boxplotPara | Parallelized Box Plots for Microarray Data
class:vsnInputPara | Class to contain input data and parameters for parallel vsn functions
combineMatrices | Merge a list of split objects
computeExprSetPara | Parallel generate a set of expression values
dim-method | Class to contain input data and parameters for parallel vsn functions
distributeFiles | Distribute files to slaves
justvsnPara | Parallel fir of the vsn model
makeCluster | Starting and Stopping SNOW Clusters
MAplotPara | Parallelized relative M vs. A plots for Microarray Data
MAplotSer | Parallelized relative M vs. A plots for Microarray Data
mergeAffyBatches | Merge a list of split objects
ncol-method | Class to contain input data and parameters for parallel vsn functions
normalizeAffyBatchConstantPara | Parallelized scaling normalization
normalizeAffyBatchInvariantsetPara | Parallelized Invariante Set normalization
normalizeAffyBatchLoessIterPara | Parallelized partial loess normalization with permutation
normalizeAffyBatchLoessPara | Parallelized loess normalization
normalizeAffyBatchQuantilesPara | Parallelized quantile normalization
normalizeQuantilesPara | Parallelized quantile normalization
nrow-method | Class to contain input data and parameters for parallel vsn functions
preproPara | Parallelized preprocessing
read.affybatchPara | Parallelized Read-AffyBatch function
removeDistributedFiles | Remove distributed files from slaves
rmaPara | Parallelized PMA preprocessing
splitAffyBatch | Functions to split objects into parts
splitFileVector | Functions to split objects into parts
splitMatrix | Functions to split objects into parts
stopCluster | Starting and Stopping SNOW Clusters
summaryM1M2Para | Parallel Quality Assessment Summary
vsn2Para | Parallel fir of the vsn model
vsnInputPara | Class to contain input data and parameters for parallel vsn functions
vsnInputPara-class | Class to contain input data and parameters for parallel vsn functions
vsnrmaPara | Parallel fir of the vsn model