confidence              provides various kinds of confidence measures
                        for an inferred progression model
data.load               load a dataset (binary matrix) from a file or a
                        preloaded dataset.
events                  Events collection for Ovarian cancer CGH data
events.add              add a new event (e.g., a missense point
                        mutation for EGFR)
events.load             load a set of events from file
ov.cgh                  Ovarian cancer CGH data
reset                   reset
tronco.bootstrap        perform bootstrap algorithm
tronco.bootstrap.show   show bootstrapping results
tronco.caprese          runs CAPRESE algorithm
tronco.plot             plot a progression model
types                   Types collection for Ovarian cancer CGH data
types.add               add a new type of event (e.g., missense point
                        mutation)
types.load              load a set of types from file
