TPP                     Thermal proteome profiling (TPP)
analyzeTPPCCR           Analyze TPP-CCR experiment
analyzeTPPTR            Analyze TPP-TR experiment
hdacCCR_config_repl1    The configuration table to analyze
                        hdacCCR_data_repl1.
hdacCCR_config_repl2    The configuration table to analyze
                        hdacCCR_data_repl2.
hdacCCR_data_repl1      TPP-CCR example dataset (replicate 1)
hdacCCR_data_repl2      TPP-CCR example dataset (replicate 2)
hdacCCR_smallExample    Example subsets of a Panobinostat TPP-CCR
                        dataset (replicates 1 and 2) and the
                        corresponding configuration tables to start the
                        analysis.
hdacTR_config           The configuration table to analyze hdacTR_data.
hdacTR_data             TPP-TR example dataset.
hdacTR_fittedData_smallExample
                        Example of a TPP-TR dataset with fitted melting
                        curve parameters.
hdacTR_resultsTable_smallExample
                        Example of a TPP-TR result table.
hdacTR_smallExample     Example subset of a Panobinostat TPP-TR dataset
                        and the corresponding configuration table to
                        start the analysis.
resultTable             Example of a TPP-TR result table.
tppDefaultTheme         Default ggplot theme for melting curve plots.
tppExport               Produce Excel table of TPP-TR or TPP-CCR
                        experiment.
tppQCPlotsCorrelateExperiments
                        Plot pairwise relationships between the
                        proteins in different TPP experiments.
tppVenn                 Venn diagrams of detected proteins per
                        experiment.
tppccrCurveFit          Fit and analyse dose response curves
tppccrImport            Import TPP-CCR dataset for analysis by the
                        'TPP' package.
tppccrNormalize         Normalize data from TPP-CCR experiments
tppccrTransform         Transform fold changes of TPP-CCR experiment
tpptrCurveFit           Fit melting curves to all proteins in a
                        dataset.
tpptrDefaultNormReqs    Default filter criteria for fold change
                        normalization
tpptrImport             Import TPP-TR datasets for analysis by the
                        'TPP' package.
tpptrNormalize          Normalize protein fold changes
tpptrQCPlotsMinSlopes_vs_MPdiffs
                        Plot minSlope vs. melting point differences
tpptrResultTable        Statistical analysis of melting curve
                        parameters.
trDataFitted            Example of a TPP-TR dataset with fitted melting
                        curve parameters.
