Package: SplicingGraphs
Title: Create, manipulate, visualize splicing graphs, and assign
        RNA-seq reads to them
Version: 1.8.1
Author: D. Bindreither, M. Carlson, M. Morgan, H. Pages
License: Artistic-2.0
Description: This package allows the user to create, manipulate, and visualize
	splicing graphs and their bubbles based on a gene model for a given
	organism. Additionally it allows the user to assign RNA-seq reads to
	the edges of a set of splicing graphs, and to summarize them in
        different ways.
Maintainer: H. Pages <hpages@fredhutch.org>
Depends: GenomicFeatures (>= 1.17.13), GenomicAlignments (>= 1.1.22),
        Rgraphviz (>= 2.3.7)
Imports: methods, utils, igraph, BiocGenerics, S4Vectors, IRanges,
        GenomeInfoDb, GenomicRanges, GenomicFeatures, Rsamtools,
        GenomicAlignments, graph, Rgraphviz
Suggests: igraph, Gviz, TxDb.Hsapiens.UCSC.hg19.knownGene,
        RNAseqData.HNRNPC.bam.chr14, RUnit
Collate: utils.R igraph-utils.R SplicingGraphs-class.R
        plotTranscripts-methods.R sgedgesByGene-methods.R
        txpath-methods.R sgedges-methods.R sgraph-methods.R
        rsgedgesByGene-methods.R bubbles-methods.R assignReads.R
        countReads-methods.R toy_data.R zzz.R
biocViews: Genetics, Annotation, DataRepresentation, Visualization,
        Sequencing, RNASeq, GeneExpression, AlternativeSplicing,
        Transcription
NeedsCompilation: no
Packaged: 2015-05-22 04:13:58 UTC; biocbuild
Built: R 3.2.0; ; 2015-05-22 13:08:24 UTC; windows
