Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.4.8
Author: Julian Gehring (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).  It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
URL:
        http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html,
        https://github.com/julian-gehring/SomaticSignatures-release
Imports: S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio,
        reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.1.0), VariantAnnotation, GenomicRanges
Suggests: testthat, knitr, parallel, BSgenome.Hsapiens.UCSC.hg19,
        SomaticCancerAlterations, ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        GenomicVariation, StatisticalMethod
NeedsCompilation: no
Packaged: 2015-09-05 05:05:28 UTC; biocbuild
Built: R 3.2.2; ; 2015-09-05 13:50:52 UTC; windows
