Package: R3CPET
Type: Package
Title: 3CPET: Finding Co-factor Complexes in Chia-PET experiment using
        a Hierarchical Dirichlet Process
Description: The package provides a method to infer the set of proteins
        that are more probably to work together to maintain chormatin
        interaction given a ChIA-PET experiment results.
Version: 1.0.0
Date: 2013-11-23
Author: M. N. Djekidel, Yang Chen et al.
Maintainer: Mohamed Nadhir Djekidel <djek.nad@gmail.com>
License: GPL (>=2)
Depends: R (>= 3.2), Rcpp (>= 0.10.4), methods
Imports: parallel, clues, ggplot2, pheatmap, IRanges, clValid,
        igraph,data.table,GenomicRanges,S4Vectors, DAVIDQuery,
        ggbio,reshape2,Hmisc
LinkingTo: Rcpp
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, TxDb.Hsapiens.UCSC.hg19.knownGene,
        biovizBase, biomaRt, AnnotationDbi, org.Hs.eg.db, shiny,
        ChIPpeakAnno
biocViews: NetworkInference, GenePrediction, Bayesian, GraphAndNetwork,
        Network, GeneExpression
NeedsCompilation: yes
Packaged: 2015-04-17 06:00:48 UTC; biocbuild
Built: R 3.2.0; i386-w64-mingw32; 2015-04-17 12:13:26 UTC; windows
Archs: i386, x64
