CpGsDemo                Toy data for the package - 1000 CpG regions to
                        be tested in a GRanges object
M3D-package             Non-parametric statistical testing
M3D_Para                Computes the components of the M3D
                        test-statistic over all regions for all
                        sample-pairs.
M3D_Single              Computes the components of the M3D
                        test-statistic over one region for 2 samples
M3D_Wrapper             Computes the components of the M3D
                        test-statistic over all regions for all
                        sample-pairs.
MMDlistDemo             Toy data for the package - the output of the
                        M3D_Wrapper function.
PDemo                   Toy data for the package - the output of the
                        pvals function.
determineGroupComps     Creates strings of sample pair comparisons
findComps               Finds columns in the M3D test-statistic matrix
medianFreq              Finds the median
plotMethProfile         Plots methylation profiles over a specific
                        region
pvals                   Computes p-values
readENCODEdata          Reads in ENCODE RRBS data
rrbsDemo                Toy data for the package - methylation data for
                        cytosines sites within the testing regions
                        only, in an rrbs object.
