LowMACA-class           Class '"LowMACA"'
LowMACA-package         LowMACA : Low frequency Mutations Analysis via
                        Consensus Alignment
alignSequences          Align sequences via clustalo
bpAll                   Draw a mutation barplot
entropy                 Calculate LowMACA statistics
getMutations            Retrieve mutation data for a LowMACA object
lfm                     Show significant clusters of mutations
lmAlignment             Show Alignment Results from a LowMACA object
lmEntropy               Show Entropy Information Contained in a LowMACA
                        object
lmMutations             Show Mutation Data Contained in a LowMACA
                        object
lmObj                   Example of a LowMACA object
lmParams                Show and set parameters
lmPlot                  Draw a comprehensive LowMACA plot
mapMutations            Map mutations on consensus sequence
newLowMACA              Construct a LowMACA object
nullProfile             Draw a mutational profile plot
parallelize             Show and set parallelization options
protter                 Draw a Protter plot
setup                   Setup of a LowMACA object
showTumorType           List of tumor types
