# Identification of Novel alternative PolyAdenylation Sites (PAS)

## Documentation for package ‘InPAS’ version 1.0.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

InPAS-package | alternative polyadenylation and cleavage estimations
coverageFromBedGraph | read coverage from bedGraph files
CPsites | predict the cleavage and polyadenylation(CP) site
InPAS | alternative polyadenylation and cleavage estimations
inPAS | do estimation of alternative polyadenylation and cleavage site in one step
usage4plot | prepare coverage data and fitting data for plot
utr3.hg19 | 3'UTR annotation for hg19 obtained from utr3Annotation
utr3.mm10 | 3'UTR annotation for mm10 obtained from utr3Annotation
utr3Annotation | extract 3'UTR from TxDb object
utr3UsageEstimation | estimation of 3'UTR usage for each region