# Using self-organizing maps for visualization and interpretation of cytometry data

## Documentation for package ‘FlowSOM’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

AggregateFlowFrames | Aggregate multiple fcs files together
BuildMST | Build Minimal Spanning Tree
BuildSOM | Build a self-organizing map
CountGroups | Compute differences between groups
FlowSOM | Run the FlowSOM algorithm
FlowSOMSubset | FlowSOM subset
FMeasure | FMeasure of a clustering result
MetaClustering | MetaClustering
metaClustering_consensus | MetaClustering
NewData | Map new data to a FlowSOM grid
PlotCenters | Plot cluster centers on a 2D plot
PlotClusters2D | Plot nodes on scatter plot
PlotGroups | Plot differences between groups
PlotMarker | Plot marker values
PlotPies | Plot comparison with other clustering
PlotStars | Plot star charts
Purity | Purity of a clustering result
ReadInput | Read fcs-files or flowframes
UpdateNodeSize | Update nodesize of FlowSOM object