Package: EnrichmentBrowser
Version: 1.2.2
Date: 2015-08-31
Title: Seamless navigation through combined results of set-based and
        network-based enrichment analysis
Author: Ludwig Geistlinger
Maintainer: Ludwig Geistlinger <Ludwig.Geistlinger@bio.ifi.lmu.de>
Depends: R(>= 3.0.0), Biobase, GSEABase, pathview
Imports: AnnotationDbi, ComplexHeatmap, DESeq2, EDASeq, GenomicRanges,
        GO.db, KEGGREST, KEGGgraph, MASS, PathNet, ReportingTools,
        Rgraphviz, S4Vectors, SparseM, SPIA, biocGraph, biomaRt, edgeR,
        geneplotter, graph, hwriter, limma, mixtools, neaGUI, npGSEA,
        safe, stringr, topGO
Suggests: ALL, BiocStyle, airway, hgu95av2.db
Description: The EnrichmentBrowser package implements essential functionality 
    for the enrichment analysis of gene expression data. The analysis combines 
    the advantages of set-based and network-based enrichment analysis in order 
    to derive high-confidence gene sets and biological pathways that are 
    differentially regulated in the expression data under investigation. 
    Besides, the package facilitates the visualization and exploration of such 
    sets and pathways.
License: Artistic-2.0
biocViews: Microarray, RNASeq, GeneExpression, DifferentialExpression,
        Pathways, GraphAndNetwork, Network, GeneSetEnrichment,
        NetworkEnrichment, Visualization, ReportWriting
NeedsCompilation: no
Packaged: 2015-09-01 05:24:36 UTC; biocbuild
Built: R 3.2.2; ; 2015-09-01 08:26:31 UTC; windows
