# EBcoexpress for Differential Co-Expression Analysis

## Documentation for package ‘EBcoexpress’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

bwmc | Basic utilities for the EBcoexpress package
crit.fun | Basic utilities for the EBcoexpress package
ebCoexpressFullTCAECM | Functions to run single-study analyses
ebCoexpressMeta | A function for DC meta-analysis that combines individual study analyses
ebCoexpressOneStep | Functions to run single-study analyses
ebCoexpressZeroStep | Functions to run single-study analyses
fiftyGenes | The fiftyGenes expression matrix
initializeHP | Initializing Hyperparameters for EM
makeMyD | A function to convert the X expression matrix into the D correlation matrix
priorDiagnostic | Visual diagnostic for the EBcoexpress prior
rankMyGenes | A function to rank the genes by the number of DC pairs in which they appear
showNetwork | A function for looking at the co-expression among a small group of genes
showPair | A function for looking at a pair's differential co-expression