Package: DMRcaller
Type: Package
Title: Differentially Methylated Regions caller
Version: 1.0.0
Date: 2015-02-26
Authors@R: c(person(given="Nicolae Radu", family="Zabet", role =
        c("aut","cre"), email = "n.r.zabet@gen.cam.ac.uk"),
        person(given="Jonathan", family="Tsang", role = "aut", email =
        "jmft2@cam.ac.uk"))
Author: Nicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk> and Jonathan
        Michael Foonlan Tsang <jmft2@cam.ac.uk>
Maintainer: Nicolae Radu Zabet <n.r.zabet@gen.cam.ac.uk>
Description: Uses Bisulfite sequencing data in two conditions and
        identifies differentially methylated regions between the
        conditions in CG and non-CG context. The input is the CX report
        files produced by Bismark and the output is a list of DMRs
        stored as GRanges objects.
License: GPL-3
LazyLoad: yes
Imports: parallel, Rcpp, RcppRoll
Depends: R (>= 3.2), GenomicRanges, IRanges, S4Vectors
Suggests: knitr, RUnit, BiocGenerics
biocViews: DifferentialMethylation, DNAMethylation, Software,
        Sequencing, Coverage
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-04-17 05:56:00 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 08:17:06 UTC; windows
